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--- research_group:start [2019/11/15 07:20]
pkleczek created
+++ research_group:start [2020/05/06 20:51]
mpiekarski [Anomaly detection with the use of pre-trained CNN architectures]
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-====== Research Group ======
+====== MVG Research Group ======
-<nspages -subns -nopages -textNS="Kategorie" -textPages="Strony" -title -hideNoPages -hideNoSubns -exclude>
+{{page>research_group:includes:intro&nofooter&noheader&noindent}}
+===== Research area =====
+==== Deep neural networks in early detection of melanomas ====
+FIXME
+====  Computer-aided dermatopathology ====
+**Research goal:**\\
+To improve skin melanoma diagnosis by providing additional means of automatic detection of important diagnostic features in histopathological images.
+The research topics include:
+  * tissue segmentation
+  * epidermis segmentation
+  * nests of melanocytes segmentation
+  * epidermal morphometry measurement
+Team members involved:
+  * J. Jaworek-Korjakowska
+  * P. Kłeczek
+  * D. Kucharski
+++++ Research activity |
+Publications:
+  * **Dariusz Kucharski**, **Pawel Kleczek**, **Joanna Jaworek-Korjakowska**, Grzegorz Dyduch, Marek Gorgon. //Semi-Supervised Nests of Melanocytes Segmentation Method Using Convolutional Autoencoders//. Sensors, 2020, vol. 20, issue 6, 1546, doi: [[https://doi.org/10.3390/s20061546|10.3390/s20061546]]  ([[https://www.mdpi.com/1424-8220/20/6/1546/htm|HTML]])  \\ [size=80%][IF5 (2018) = 2.737, Top10][/size]
+  * **Pawel Kleczek**, **Joanna Jaworek-Korjakowska**, Marek Gorgon. //A novel method for tissue segmentation in high-resolution H&E-stained histopathological whole-slide images//. Computerized Medical Imaging and Graphics, 2020, vol. 79, 2022, Art. ID 101686, doi: [[https://doi.org/10.1016/j.compmedimag.2019.101686|10.1016/j.compmedimag.2019.101686]]  ([[https://www.sciencedirect.com/science/article/pii/S0895611119301016|HTML]])  \\ [size=80%][IF5 (2018) = 2.737, Top10][/size]
+  * **Pawel Kleczek**, Grzegorz Dyduch, Agnieszka Graczyk-Jarzynka, **Joanna Jaworek-Korjakowska**. //A New Approach to Border Irregularity Assessment with Application in Skin Pathology//. Applied Sciences (Basel), 2019, 9(10), 2022, doi: [[https://doi.org/10.3390/app9102022|10.3390/app9102022]]  ([[https://www.mdpi.com/2076-3417/9/10/2022|Abstract]], [[https://www.mdpi.com/2076-3417/9/10/2022/html|HTML]], [[https://www.mdpi.com/2076-3417/9/10/2022/pdf|PDF]]) \\ [size=80%][IF5 (2018) = 2.287][/size]
+  * **Paweł Kłeczek**, Martyna Lech, Grzegorz Dyduch, **Joanna Jaworek-Korjakowska**, Ryszard Tadeusiewicz. //Segmentation of black ink and melanin in skin histopathological images//. Proc. SPIE 10581, Medical Imaging 2018: Digital Pathology, 105811A (2018); doi: [[https://doi.org/10.1117/12.2292859|10.1117/12.2292859]]. ([[https://www.spiedigitallibrary.org/conference-proceedings-of-spie/10581/105811A/Segmentation-of-black-ink-and-melanin-in-skin-histopathological-images/10.1117/12.2292859.short?SSO=1|Abstract]])
+  * **Paweł Kłeczek**, Grzegorz Dyduch, **Joanna Jaworek-Korjakowska**, Ryszard Tadeusiewicz. //Automated epidermis segmentation in histopathological images of human skin stained with hematoxylin and eosin//. Proc. SPIE 10140, Medical Imaging 2017: Digital Pathology, 101400M (2017). doi: [[https://doi.org/10.1117/12.2249018|10.1117/12.2249018]]. ([[http://proceedings.spiedigitallibrary.org/proceeding.aspx?articleid=2608559|Abstract]], [[https://drive.google.com/open?id=0B1Rp-jhc52-PQldnMjZNM01tUVk|Poster PDF]])
+  * **Paweł Kłeczek**, Sylwia Mól, **Joanna Jaworek-Korjakowska**. //The Accuracy of H&E Stain Unmixing Techniques When Estimating Relative Stain Concentrations//. PCBBE 2017: Advances in Intelligent Systems and Computing, Springer (2017), doi: [[http://dx.doi.org/10.1007/978-3-319-66905-2_7|10.1007/978-3-319-66905-2_7]], pp. 87--97 ([[https://link.springer.com/chapter/10.1007/978-3-319-66905-2_7|Abstract]])
+Conferences:
+  * [[https://spie.org/conferences-and-exhibitions/past-conferences-and-exhibitions/medical-imaging-2018?SSO=1|SPIE Medical Imaging 2018]] (Houston, TX, USA) \\ **Paweł Kłeczek**: //Segmentation of black ink and melanin in skin histopathological images//((All authors: **P. Kłeczek**, M. Lech, G. Dyduch, **J. Jaworek-Korjakowska**, R. Tadeusiewicz.)) [size=80%](poster)[/size]
+  * [[http://www.pcbbe.agh.edu.pl/|20-th Polish Conference on Biocybernetics and Biomedical Engineering]] (Kraków, Polska) \\ **Paweł Kłeczek**: //The accuracy of H&E stain unmixing techniques when estimating relative stain concentrations//((All authors: **P. Kłeczek**, S. Mól, **J. Jaworek-Korjakowska**)) [size=80%](poster)[/size]
+  * [[https://spie.org/conferences-and-exhibitions/past-conferences-and-exhibitions/medical-imaging-2017|SPIE Medical Imaging 2017]] (Orlando, FL, USA) \\ **Paweł Kłeczek**: //Automated epidermis segmentation in histopathological images of human skin stained with hematoxylin and eosin//((All authors: **P. Kłeczek**, G. Dyduch, **J. Jaworek-Korjakowska**, R.Tadeusiewicz)) [size=80%](poster)[/size]
+++++
+==== Anomaly detection with the use of pre-trained CNN architectures ====
+**Research goal:**\\
+To detect anomalies in multivariate diagnostic signals of the synchrotron control system by pre-trained CNN architectures.
+The research topics include:
+  * data mining and preparation
+  * data preprocessing
+  * CNN architectures building
+Team members involved:
+  * M. Piekarski
+  * J. Jaworek-Korjakowska
+==== Detection and analysis of patterns (@asia: muszę dopracować ) ====
+FIXME
+==== Cell detection - Andrzej... ====
+FIXME
+----
+<nspages -subns -textNS="Kategorie" -textPages="Strony" -title -hideNoPages -hideNoSubns -exclude -r -pregNSOff="/includes/" -pregPagesOff="/includes.*/" >

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