research_group:start
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research_group:start [2020/05/06 18:47] pkleczek [Computer-aided histopathology] |
research_group:start [2020/05/06 19:38] pkleczek [Cell detection - Andrzej...] |
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| - | ==== Computer-aided histopathology ==== | + | ==== Computer-aided dermatopathology ==== |
| **Research goal:**\\ | **Research goal:**\\ | ||
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| * tissue segmentation | * tissue segmentation | ||
| * epidermis segmentation | * epidermis segmentation | ||
| + | * nests of melanocytes segmentation | ||
| * epidermal morphometry measurement | * epidermal morphometry measurement | ||
| + | |||
| + | Team members involved: | ||
| + | * J. Jaworek-Korjakowska | ||
| + | * P. Kłeczek | ||
| + | * D. Kucharski | ||
| ++++ Research activity | | ++++ Research activity | | ||
| + | |||
| + | Publications: | ||
| + | |||
| * **Dariusz Kucharski**, **Pawel Kleczek**, **Joanna Jaworek-Korjakowska**, Grzegorz Dyduch, Marek Gorgon. //Semi-Supervised Nests of Melanocytes Segmentation Method Using Convolutional Autoencoders//. Sensors, 2020, vol. 20, issue 6, 1546, doi: [[https://doi.org/10.3390/s20061546|10.3390/s20061546]] ([[https://www.mdpi.com/1424-8220/20/6/1546/htm|HTML]]) \\ [size=80%][IF5 (2018) = 2.737, Top10][/size] | * **Dariusz Kucharski**, **Pawel Kleczek**, **Joanna Jaworek-Korjakowska**, Grzegorz Dyduch, Marek Gorgon. //Semi-Supervised Nests of Melanocytes Segmentation Method Using Convolutional Autoencoders//. Sensors, 2020, vol. 20, issue 6, 1546, doi: [[https://doi.org/10.3390/s20061546|10.3390/s20061546]] ([[https://www.mdpi.com/1424-8220/20/6/1546/htm|HTML]]) \\ [size=80%][IF5 (2018) = 2.737, Top10][/size] | ||
| * **Pawel Kleczek**, **Joanna Jaworek-Korjakowska**, Marek Gorgon. //A novel method for tissue segmentation in high-resolution H&E-stained histopathological whole-slide images//. Computerized Medical Imaging and Graphics, 2020, vol. 79, 2022, Art. ID 101686, doi: [[https://doi.org/10.1016/j.compmedimag.2019.101686|10.1016/j.compmedimag.2019.101686]] ([[https://www.sciencedirect.com/science/article/pii/S0895611119301016|HTML]]) \\ [size=80%][IF5 (2018) = 2.737, Top10][/size] | * **Pawel Kleczek**, **Joanna Jaworek-Korjakowska**, Marek Gorgon. //A novel method for tissue segmentation in high-resolution H&E-stained histopathological whole-slide images//. Computerized Medical Imaging and Graphics, 2020, vol. 79, 2022, Art. ID 101686, doi: [[https://doi.org/10.1016/j.compmedimag.2019.101686|10.1016/j.compmedimag.2019.101686]] ([[https://www.sciencedirect.com/science/article/pii/S0895611119301016|HTML]]) \\ [size=80%][IF5 (2018) = 2.737, Top10][/size] | ||
| Line 25: | Line 34: | ||
| * **Paweł Kłeczek**, Grzegorz Dyduch, **Joanna Jaworek-Korjakowska**, Ryszard Tadeusiewicz. //Automated epidermis segmentation in histopathological images of human skin stained with hematoxylin and eosin//. Proc. SPIE 10140, Medical Imaging 2017: Digital Pathology, 101400M (2017). doi: [[https://doi.org/10.1117/12.2249018|10.1117/12.2249018]]. ([[http://proceedings.spiedigitallibrary.org/proceeding.aspx?articleid=2608559|Abstract]], [[https://drive.google.com/open?id=0B1Rp-jhc52-PQldnMjZNM01tUVk|Poster PDF]]) | * **Paweł Kłeczek**, Grzegorz Dyduch, **Joanna Jaworek-Korjakowska**, Ryszard Tadeusiewicz. //Automated epidermis segmentation in histopathological images of human skin stained with hematoxylin and eosin//. Proc. SPIE 10140, Medical Imaging 2017: Digital Pathology, 101400M (2017). doi: [[https://doi.org/10.1117/12.2249018|10.1117/12.2249018]]. ([[http://proceedings.spiedigitallibrary.org/proceeding.aspx?articleid=2608559|Abstract]], [[https://drive.google.com/open?id=0B1Rp-jhc52-PQldnMjZNM01tUVk|Poster PDF]]) | ||
| * **Paweł Kłeczek**, Sylwia Mól, **Joanna Jaworek-Korjakowska**. //The Accuracy of H&E Stain Unmixing Techniques When Estimating Relative Stain Concentrations//. PCBBE 2017: Advances in Intelligent Systems and Computing, Springer (2017), doi: [[http://dx.doi.org/10.1007/978-3-319-66905-2_7|10.1007/978-3-319-66905-2_7]], pp. 87--97 ([[https://link.springer.com/chapter/10.1007/978-3-319-66905-2_7|Abstract]]) | * **Paweł Kłeczek**, Sylwia Mól, **Joanna Jaworek-Korjakowska**. //The Accuracy of H&E Stain Unmixing Techniques When Estimating Relative Stain Concentrations//. PCBBE 2017: Advances in Intelligent Systems and Computing, Springer (2017), doi: [[http://dx.doi.org/10.1007/978-3-319-66905-2_7|10.1007/978-3-319-66905-2_7]], pp. 87--97 ([[https://link.springer.com/chapter/10.1007/978-3-319-66905-2_7|Abstract]]) | ||
| + | |||
| + | Conferences: | ||
| + | |||
| + | * [[https://spie.org/conferences-and-exhibitions/past-conferences-and-exhibitions/medical-imaging-2018?SSO=1|SPIE Medical Imaging 2018]] (Houston, TX, USA) \\ **Paweł Kłeczek**: //Segmentation of black ink and melanin in skin histopathological images//((All authors: **P. Kłeczek**, M. Lech, G. Dyduch, **J. Jaworek-Korjakowska**, R. Tadeusiewicz.)) [size=80%](poster)[/size] | ||
| + | * [[http://www.pcbbe.agh.edu.pl/|20-th Polish Conference on Biocybernetics and Biomedical Engineering]] (Kraków, Polska) \\ **Paweł Kłeczek**: //The accuracy of H&E stain unmixing techniques when estimating relative stain concentrations//((All authors: **P. Kłeczek**, S. Mól, **J. Jaworek-Korjakowska**)) [size=80%](poster)[/size] | ||
| + | * [[https://spie.org/conferences-and-exhibitions/past-conferences-and-exhibitions/medical-imaging-2017|SPIE Medical Imaging 2017]] (Orlando, FL, USA) \\ **Paweł Kłeczek**: //Automated epidermis segmentation in histopathological images of human skin stained with hematoxylin and eosin//((All authors: **P. Kłeczek**, G. Dyduch, **J. Jaworek-Korjakowska**, R.Tadeusiewicz)) [size=80%](poster)[/size] | ||
| + | |||
| + | |||
| ++++ | ++++ | ||
| ==== Anomaly detection with the use of pre-trained CNN architectures ==== | ==== Anomaly detection with the use of pre-trained CNN architectures ==== | ||
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| - | <nspages -subns -textNS="Kategorie" -textPages="Strony" -title -hideNoPages -hideNoSubns -exclude> | + | <nspages -subns -textNS="Kategorie" -textPages="Strony" -title -hideNoPages -hideNoSubns -exclude -r -pregNSOff="/includes/" -pregPagesOff="/includes.*/" > |
research_group/start.txt · Last modified: 2023/04/16 23:24 by abrodzicki
