====== Publications ======

Full lists of publications (in [[https://bpp.agh.edu.pl/|BPP AGH]] database):
  * [[https://bpp.agh.edu.pl/autor/jaworek-korjakowska-joanna-06383|Joanna Jaworek-Korjakowska]]
  * [[https://www.bpp.agh.edu.pl/autor/kleczek-pawel-17866|Paweł Kłeczek]]
  * [[https://bpp.agh.edu.pl/autor/brodzicki-andrzej-43141|Andrzej Brodzicki]]
  * [[https://bpp.agh.edu.pl/autor/kucharski-dariusz-30414|Dariusz Kucharski]]
  * [[https://bpp.agh.edu.pl/autor/piekarski-michal-43242|Michał Piekarski]]

MVG Group IF: 25.7\\ FIXME zaktualizować

===== 2023 =====
  * **Aleksandrowicz M.** and **Jaworek-Korjakowska J.**: //Metrics for Assessing Generalization of Deep Reinforcement Learning in Parameterized Environments//, Journal of Artificial Intelligence and Soft Computing Research, 2023, **IF 2,8, 140 pkt**, [[https://doi.org/10.2478/jaiscr-2024-0003|10.2478/jaiscr-2024-0003]], [[https://github.com/macmacal/drl_generalization_metrics| GitHub repo]].

===== 2022 =====

  * Cassidy B., Kendrick C., **Brodzicki A.**, **Jaworek-Korjakowska J.**, Hoon Yap M.: Analysis of the ISIC image datasets: usage, benchmarks and recommendations, Medical Image Analysis, 2022, **IF 8.545, 200 pkt**

  * **Wójcicka A.**, Walusiak Ł., Mroczka K., **Jaworek-Korjakowska J.**, Oprzędkiewicz K., Wróbel Z.: The object segmentation from the microstructure of a FSW dissimilar weld, Materials, 2022, **IF 3,748, 140 pkt**

  * **Brodzicki A.**, **Kucharski D.**, **Piekarski M.**, **Kostuch A.**, **Jaworek-Korjakowska J.**: Deep neural network interpretability methods for supervised and unsupervised problems, PP-RAI'2022: proceedings of the 3rd Polish conference on Artificial intelligence, 2022

  * Gorgoń M., et al.: Systemy wizyjne w zastosowaniach przemysłowych, Nauka – technika – technologia : seria wydawnicza AGH, 2022

  * **Piekarski M.**: Deep Neural Network for Beam Profile Classification in Synchrotron, International Beam Instrumentation Conference, 2022

  * **Kucharski D.**, **Kostuch A.**, **Brodzicki A.**, **Noworolnik F.**, **Jaworek-Korjakowska J.**: DFU-Ens: End-to-End Diabetic Foot Ulcer Segmentation Framework with Vision Transformer Based Detection, Proceedings of the 25th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2022

  * **Jaworek-Korjakowska, J.**, **Wójcicka A.**, **Kucharski D.**, **Brodzicki A.**, Kendrick C., Cassidy B., Hoon Yap M.: Skin_Hair dataset: Setting the benchmark for effective hair inpainting methods for improving the image quality of dermoscopic images, Proceedings of the 2022 European Conference on Computer Vision (ECCV), 2022


===== 2021 =====

  * **Jaworek-Korjakowska J.**, **Kostuch A.**, Skruch P.: SafeSO: interpretable and explainable deep learning approach for seat occupancy classification in vehicle interior, 2021 IEEE/CVF conference on Computer Vision and Pattern Recognition Workshops, 2021

  * **Brodzicki A.**, **Piekarski M.**, **Jaworek-Korjakowska J.**: The whale optimization algorithm approach for deep neural networks, Sensors, 2021, IF 3,847, 100 pkt

  * **Jaworek-Korjakowska J.**, **Brodzicki A.**, Cassidy B., Kendrick C., Hoon Yap M.: Interpretability of a deep learning based approach for the classification of skin lesions into main anatomic body sites, Cancers, 2021, IF 6.575, 140 pkt


===== 2020 =====

  * **Andrzej Brodzicki**, **Joanna Jaworek-Korjakowska**, **Paweł Kłeczek**, Megan Garland, Matthew Bogyo. //Pre-trained deep convolutional neural network for clostridioides difficile bacteria cytotoxicity classification based on fluorescence images//, Sensors, 20(23), 2020, [[https://doi.org/10.3390/s20236713|10.3390/s20236713]] ([[https://www.mdpi.com/1424-8220/20/23/6713|HTML]]) \\ [size=80%][IF5 (2018) = ???][/size] 

  * **Michał Piekarski**, **Joanna Jaworek-Korjakowska**, Adriana I. Wawrzyniak, **Marek Gorgon**, Convolutional neural network architecture for beam instabilities identification in Synchrotron Radiation Systems as an anomaly detection problem, Measurement, 2020, [[https://doi.org/10.1016/j.measurement.2020.108116]] \\ [size=80%][IF5 (2018) = 3.364, Top10][/size] 

  * **Dariusz Kucharski**, **Pawel Kleczek**, **Joanna Jaworek-Korjakowska**, Grzegorz Dyduch, **Marek Gorgon**. //Semi-Supervised Nests of Melanocytes Segmentation Method Using Convolutional Autoencoders//. Sensors, 2020, vol. 20, issue 6, 1546, doi: [[https://doi.org/10.3390/s20061546|10.3390/s20061546]]  ([[https://www.mdpi.com/1424-8220/20/6/1546/htm|HTML]])  \\ [size=80%][IF (2019): 3.275; IF5 (2018) = 2.737, Top10][/size] 

  * **Joanna Jaworek-Korjakowska**, **Pawel Kleczek**, **Marek Gorgon**. //Melanoma Thickness Prediction Based on Convolutional Neural Network With VGG-19 Model Transfer Learning//. 2019 IEEE/CVF Conference on Computer Vision and Pattern Recognition Workshops (CVPRW), Long Beach, CA, USA, 2019, pp. 2748--2756, doi: [[https://doi.org/10.1109/CVPRW.2019.00333]] \\ [size=80%][Honorable Mention Award; 200 pkt MNiSW][/size]


  * **Pawel Kleczek**, **Joanna Jaworek-Korjakowska**, **Marek Gorgon**. //A novel method for tissue segmentation in high-resolution H&E-stained histopathological whole-slide images//. Computerized Medical Imaging and Graphics, 2020, vol. 79, 2022, Art. ID 101686, doi: [[https://doi.org/10.1016/j.compmedimag.2019.101686|10.1016/j.compmedimag.2019.101686]]  ([[https://www.sciencedirect.com/science/article/pii/S0895611119301016|HTML]])  \\ [size=80%][IF (2019): 3.750; IF5 (2018) = 2.737, Top10][/size] /* IF (2018) = 3.298 */


===== 2019 =====

  * **Pawel Kleczek**, Grzegorz Dyduch, Agnieszka Graczyk-Jarzynka, **Joanna Jaworek-Korjakowska**. //A New Approach to Border Irregularity Assessment with Application in Skin Pathology//. Applied Sciences (Basel), 2019, 9(10), 2022, doi: [[https://doi.org/10.3390/app9102022|10.3390/app9102022]]  ([[https://www.mdpi.com/2076-3417/9/10/2022|Abstract]], [[https://www.mdpi.com/2076-3417/9/10/2022/html|HTML]], [[https://www.mdpi.com/2076-3417/9/10/2022/pdf|PDF]]) \\ [size=80%][IF (2018) = 2.217; IF5 (2018) = 2.287][/size]
  * [size=80%](konferencja)[/size] [[https://icalepcs2019.bnl.gov/home.html|ICALEPCS'19]] (nbsp) **Michał Piekarski**, W.T Kitka, **Joanna Jaworek-Korjakowska**. //Deep Neural Network for Anomaly Detection in Accelerators// ([[http://icalepcs2019.vrws.de/papers/wepha121.pdf|PDF]], [[http://icalepcs2019.vrws.de/posters/wepha121_poster.pdf|Poster]], [[http://icalepcs2019.vrws.de/index.html|Web]])


===== 2018 =====

  * **Paweł Kłeczek**, Martyna Lech, Grzegorz Dyduch, **Joanna Jaworek-Korjakowska**, Ryszard Tadeusiewicz. //Segmentation of black ink and melanin in skin histopathological images//. Proc. SPIE 10581, Medical Imaging 2018: Digital Pathology, 105811A (2018); doi: [[https://doi.org/10.1117/12.2292859|10.1117/12.2292859]]. ([[https://www.spiedigitallibrary.org/conference-proceedings-of-spie/10581/105811A/Segmentation-of-black-ink-and-melanin-in-skin-histopathological-images/10.1117/12.2292859.short?SSO=1|Abstract]])

  * **Joanna Jaworek-Korjakowska**, **Pawel Kleczek**. //eSkin: Study on the Smartphone Application for Early Detection of Malignant Melanoma//. Wireless Communications and Mobile Computing, vol. 2018, Article ID 5767360, pp. 1--11, (2018). doi: [[https://doi.org/10.1155/2018/5767360|10.1155/2018/5767360]]. ([[https://www.hindawi.com/journals/wcmc/2018/5767360/|HTML]], [[http://downloads.hindawi.com/journals/wcmc/2018/5767360.pdf|PDF]]) \\ [size=80%][IF (2018): 1.396; IF5 (2018) = 1.364][/size]

  * **Joanna Jaworek-Korjakowska**, **Pawel Kleczek**. //Region Adjacency Graph Approach for Acral Melanocytic Lesion Segmentation//. Applied Sciences (Basel), 2018, 8(9), 1430, doi: [[https://doi.org/10.3390/app8091430|10.3390/app8091430]] ([[http://www.mdpi.com/2076-3417/8/9/1430|Abstract]], [[http://www.mdpi.com/2076-3417/8/9/1430/htm|HTML]], [[http://www.mdpi.com/2076-3417/8/9/1430/pdf|PDF]]) \\ [size=80%][IF5 (2018) = 2.287][/size]

  * Elżbieta Pociask, Krzysztof Piotr Malinowski, Magdalena Ślęzak, **Joanna Jaworek-Korjakowska**, Wojciech Wojakowski, Tomasz Roleder. //Fully automated lumen segmentation method for intracoronary optical coherence tomography//. Journal of Healthcare Engineering 2018, art. ID 1414076, pp. 1--13, doi: [[https://doi.org/10.1155/2018/1414076|10.1155/2018/1414076]] ([[https://www.hindawi.com/journals/jhe/2018/1414076/|HTML]], [[http://downloads.hindawi.com/journals/jhe/2018/1414076.pdf|PDF]])\\ [size=80%][IF5 (2018) = 1.261][/size]

  * **Joanna Jaworek-Korjakowska**. //A deep learning approach to vascular structure segmentation in dermoscopy colour images//. BioMed Research International 2018, art. ID 5049390, pp. 1--8, doi: [[https://doi.org/10.1155/2018/5049390|10.1155/2018/5049390]] ([[https://www.hindawi.com/journals/bmri/2018/5049390/|HTML]], [[http://downloads.hindawi.com/journals/bmri/2018/5049390.pdf|PDF]])\\ [size=80%][IF5 (2018) = 2.583][/size]

  * Megan Garland, **Joanna Jaworek-Korjakowska**, Urszula Libal, Matthew Bogyo, Marcin Sieńczyk. //An automatic analysis system for high-throughput Clostridium Difficile toxin activity screening//. Applied Sciences (Basel), 2018, 8(9), Art no. 1512, pp. 1–14, doi: [[https://doi.org/10.3390/app8091512|10.3390/app8091512]] ([[https://www.mdpi.com/2076-3417/8/9/1512|HTML]], [[http://www.mdpi.com/2076-3417/8/9/1512/pdf|PDF]])  \\ [size=80%][IF5 (2018) = 2.287][/size]


===== 2017 =====

  * **Paweł Kłeczek**, Grzegorz Dyduch, **Joanna Jaworek-Korjakowska**, Ryszard Tadeusiewicz. //Automated epidermis segmentation in histopathological images of human skin stained with hematoxylin and eosin//. Proc. SPIE 10140, Medical Imaging 2017: Digital Pathology, 101400M (2017). doi: [[https://doi.org/10.1117/12.2249018|10.1117/12.2249018]]. ([[http://proceedings.spiedigitallibrary.org/proceeding.aspx?articleid=2608559|Abstract]], [[https://drive.google.com/file/d/1gbc2-_9_MCjpENFTJldEq67cckUNUylr/view?usp=sharing|Poster PDF]])

  * Philip Gouverneur, **Joanna Jaworek-Korjakowska**, Lukas Köping, Kimiaki Shirahama, **Paweł Kłeczek**, Marcin Grzegorzek. //Classification of Physiological Data for Emotion Recognition//. ICAISC 2017: Artificial Intelligence and Soft Computing (2017), doi: [[https://doi.org/10.1007/978-3-319-59063-9_55|10.1007/978-3-319-59063-9_55]], pp. 619--627 ([[https://link.springer.com/chapter/10.1007/978-3-319-59063-9_55|Abstract]])

  * **Joanna Jaworek-Korjakowska**, **Paweł Kłeczek**, Marcin Grzegorzek, Kimiaki Shirahama. //Automatic Detection of Blue-Whitish Veil as the Primary Dermoscopic Feature//. ICAISC 2017: Artificial Intelligence and Soft Computing (2017), doi: [[https://doi.org/10.1007/978-3-319-59063-9_55|10.1007/978-3-319-59063-9_55]], pp. 649--657 ([[https://link.springer.com/chapter/10.1007/978-3-319-59063-9_58|Abstract]])

  * **Paweł Kłeczek**, Sylwia Mól, **Joanna Jaworek-Korjakowska**. //The Accuracy of H&E Stain Unmixing Techniques When Estimating Relative Stain Concentrations//. PCBBE 2017: Advances in Intelligent Systems and Computing, Springer (2017), doi: [[http://dx.doi.org/10.1007/978-3-319-66905-2_7|10.1007/978-3-319-66905-2_7]], pp. 87--97 ([[https://link.springer.com/chapter/10.1007/978-3-319-66905-2_7|Abstract]])

  * **Joanna Jaworek-Korjakowska**, **Paweł Kłeczek**, Ryszard Tadeusiewicz. //Detection and classification of pigment network in dermoscopic color images as one of the 7-point checklist criteria//. PCBBE 2017: Advances in Intelligent Systems and Computing, Springer (2017). pp. 174--181 ([[https://link.springer.com/chapter/10.1007/978-3-319-66905-2_15|Abstract]])


===== 2016 =====

  * **Joanna Jaworek-Korjakowska**, **Paweł Kłeczek**. //Automatic Classification of Specific Melanocytic Lesions Using Artificial Intelligence//. BioMed Research International, 2016, Vol. 2016, Article ID 8934242, 17 pages. doi: http://dx.doi.org/10.1155/2016/8934242 ([[http://www.hindawi.com/journals/bmri/2016/8934242/|HTML]], [[http://downloads.hindawi.com/journals/bmri/2016/8934242.pdf|PDF]]) \\ [size=80%][IF (2016) = 2.134; IF5 (2016) = 2.587][/size]

  * Elżbieta Pociask, **Joanna Jaworek-Korjakowska**, Krzysztof Piotr Malinowski, Tomasz Roleder, Wojciech Wojakowski. //Fully automated lipid pool detection using near infrared spectroscopy//. Computational and Mathematical Methods in Medicine, 2016, art. ID 1487859, pp. 1--9, doi: [[https://dx.doi.org/10.1155/2016/1487859|10.1155/2016/1487859]] ([[https://www.hindawi.com/journals/cmmm/2016/1487859/|HTML]], [[http://downloads.hindawi.com/journals/cmmm/2016/1487859.pdf|PDF]])  \\ [size=80%][IF = 1.2][/size]

  * **Joanna Jaworek-Korjakowska**. //Computer-aided diagnosis of micro-malignant melanoma lesions applying support vector machines//. BioMed Research International, 2016, art. ID 4381972, pp. 1--8, doi: [[http://dx.doi.org/10.1155/2016/4381972|10.1155/2016/4381972]] ([[https://www.hindawi.com/journals/bmri/2016/4381972/|HTML]], [[http://downloads.hindawi.com/journals/bmri/2016/4381972.pdf|PDF]])  \\ [size=80%][IF = 2.476][/size]

===== 2015 =====

  * **Joanna Jaworek-Korjakowska**. //Novel method for border irregularity assessment in dermoscopic color images//. Computational and Mathematical Methods in Medicine, 2015, art. ID 496202, pp. 1--11, doi: [[http://dx.doi.org/10.1155/2015/496202|10.1155/2015/496202]] ([[https://www.hindawi.com/journals/cmmm/2015/496202/|HTML]], [[http://downloads.hindawi.com/journals/cmmm/2015/496202.pdf|PDF]])  \\ [size=80%][IF = 0.887][/size]

  * **Joanna Jaworek-Korjakowska**, Ryszard Tadeusiewicz. //Design of a teledermatology system to support the consultation of dermoscopic cases using mobile technologies and cloud platform//. Bio-Algorithms and Med-Systems, 2015, 11(1), pp. 53--58, doi: [[https://doi.org/10.1515/bams-2015-0004|10.1515/bams-2015-0004]] ([[https://www.degruyter.com/view/j/bams.2015.11.issue-1/bams-2015-0004/bams-2015-0004.xml|Abstract]])


===== 2014 =====

  * **Paweł Kłeczek**, Jarosław Wąs. //Simulation of Pedestrians Behavior in a Shopping Mall//. Lecture Notes in Computer Science, 2014, Vol. 8751, pp. 650--659, doi: [[https://doi.org/10.1007/978-3-319-11520-7_69
|10.1007/978-3-319-11520-7_69]] ([[http://link.springer.com/chapter/10.1007/978-3-319-11520-7_69|Abstract & preview]])

===== 2013 =====

  * **Joanna Jaworek-Korjakowska**, Ryszard Tadeusiewicz. //Hair removal from dermoscopic color images//. Bio-Algorithms and Med-Systems, 2013, 9(2), pp. 53--58, doi: [[https://doi.org/10.1515/bams-2013-0013|10.1515/bams-2013-0013]] ([[https://www.degruyter.com/view/j/bams.2013.9.issue-2/bams-2013-0013/bams-2013-0013.xml|Abstract]])

===== 2011 =====

  * **Joanna Jaworek**. //Wykorzystanie metod przetwarzania obrazów w rozpoznawaniu i diagnostyce czerniaka złośliwego//. PAR Pomiary Automatyka Robotyka, 2011, 15(12), pp. 100--101 ([[http://yadda.icm.edu.pl/yadda/element/bwmeta1.element.baztech-article-BSW1-0088-0026|Abstract]], [[http://yadda.icm.edu.pl/yadda/element/bwmeta1.element.baztech-article-BSW1-0088-0026/c/Jaworek.pdf|PDF]])

  * Tomasz Pięciak, **Joanna Jaworek**, **Marek Gorgoń**. //Neural networks for medical image processing//. Bio-Algorithms and Med-Systems, 2011, 7(4), pp. 101--110 ([[https://yadda.icm.edu.pl/baztech/element/bwmeta1.element.baztech-b8bf4dbd-874d-4253-8a4e-df5b6645ec2d|Abstract]])