ImageJ plugins

TNTPFNFP_score

Download: TNTPFNFP_score.class

A plugin for True Negative, True Positive, False Negative and False Positive (also Accuracy, Dice, Jaccard, TPR and TNR coefficients) calculation for images with different image format. Optional ROI feature included. Interactive mode / macro recorder compatible.
macro use:
run("Clear Results");
run("TNTPFNFP score", "segmentation=segm.png mask=mask.png");
DICE = getResult("TNTPFNFP_DICE", 0);
print(DICE);

Using optional ROI

Example input:
source image mask (ground truth) an examlpe of segmentation ROI mask/ROI fusion segmentation/ROI fusion

without optional ROI


macro use: run("TNTPFNFP score", "segmentation=B_H16_segmentation_t100.png mask=B_H16_mask.png");

with optional ROI


macro use: run("TNTPFNFP score", "segmentation=B_H16_segmentation_t100.png mask=B_H16_mask.png optional_roi=B_H16_roi.png use_optional_roi");