Below I collected and summarized some useful resources on computer-aided pathology.

• Mitko Veta's repo, MICCAI 2013 Grand Challenge – Staining unmixing and normalization
  • Macenko et al.
• BIA Lab - Software (Stain Normalisation Toolbox)
  • RGB Histogram Specification, Reinhard et al., Macenko et al., Khan et al.

Images with descriptions by histopathologists – a good starting point to get a better understanding of tissue biology.

• Histology Guide (T. Clark Brelje, Robert L. Sorenson)
• Pathorama (University of Basel)
  • Pathorama - vCollections
  • Pathorama - vSlides
  • Pathorama - PathoPic
• The Iowa Virtual Slidebox (MBF Bioscience)
  To browse images you need Biolucida software.
• Prologue Histology Resource (UCSF School of Medicine)
  Within each laboratory you need to click the “Labeled version” links.

Most repositories use ImageScope to manage slide collections (see ImageScope for more information).

• University of British Columbia: VirtualSLIDEBOX
  • dermopathology: DermPath
• University of Leeds: Virtual Pathology Slide Library
• Duke University: Virtual Slide Collection
  NOTE: Images are unsortod, searching not supported.
• University of Michigan: Virtual Slide Box
  • dermatopathology: Andrea, Arps, AndreaTch, DermPath, DermPathConf, Patel
• (various universities): Slide Collection
  Links to images grouped by the type of tissue: SlideIndex

• Digital Pathology Association: Whole Slide Imaging Repository
  Links to further web pages with atlases of pathological images (created by universities).

• Atlas of Microscopic Anatomy
• Atlas histopatologii guzów skóry (Leszek Woźniak, Krzysztof W. Zieliński)
• Melanocyte Pathology - Slide Sets
  Cases of melanocytic lesions with exhaustive diagnoses and appropriate images.

(a.a. sets used for machine-learing tasks – often contain ground truth)

• BIA Lab: Datasets for Sharing
• MITOS-ATYPIA-14 Challange (H&E-stained breast cancer, images taken under x20 and x40 magnification)

• The Histology Guide – University of Leeds
  A good and accessible description of histological techniques.
• Kurs histologii ogólnej (niem.) – Universität Basel, Medizinische Fakultät (2009)
• Kurs patologii ogólnej (niem.) – Universitätsklinikum Heidelberg
• PathoBasic - Essential Pathology for Residents – within the Pathorama project
• Histology – Rice University
• Principle and Practice of Human Pathology – MIT

• Anatomy & Physiology – Rice University

• Bioimage Analysis (BIA) Lab at Warwick

• Universitätspital Basel - Pathologie - Cancer Research

• Pathorama – a platform with useful pathology-related resources (images, courses etc.)